Detailed information of SNP:
|
SNP ID:
sf0216643603(Gbrowse)
Chromosome: chr02 Position: 16643603 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 70.37% | 29.63% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 483 | 17.60% | 82.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 322 | 2.17% | 97.83% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216643603 | A->G | INTERGENIC | None |