Detailed information of SNP:
|
SNP ID:
sf0216644200(Gbrowse)
Chromosome: chr02 Position: 16644200 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1271 | 62.47% | 37.53% |
| All Indica | 798 | 72.18% | 27.82% |
| All Japonica | 353 | 40.51% | 59.49% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 215 | 46.51% | 53.49% |
| Tropical Japonica | 82 | 24.39% | 75.61% |
| Japonica Intermediate | 56 | 41.07% | 58.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216644200 | A->G | INTERGENIC | None |