Detailed information of SNP:
|
SNP ID:
sf0216645041(Gbrowse)
Chromosome: chr02 Position: 16645041 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.98% | 15.02% |
| All Indica | 798 | 78.45% | 21.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216645041 | T->A | INTERGENIC | None |