Detailed information of SNP:
|
SNP ID:
sf0216652959(Gbrowse)
Chromosome: chr02 Position: 16652959 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 75.99% | 24.01% |
| All Indica | 796 | 73.37% | 26.63% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 64.17% | 35.83% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216652959 | T->C | INTERGENIC | None |