Detailed information of SNP:
|
SNP ID:
sf0216654862(Gbrowse)
Chromosome: chr02 Position: 16654862 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 52.89% | 47.11% |
| All Indica | 786 | 81.42% | 18.58% |
| All Japonica | 495 | 5.45% | 94.55% |
| Aus | 63 | 60.32% | 39.68% |
| Indica I | 364 | 74.73% | 25.27% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 19.57% | 80.43% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216654862 | T->C | INTERGENIC | None |