Detailed information of SNP:
|
SNP ID:
sf0216654911(Gbrowse)
Chromosome: chr02 Position: 16654911 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 52.86% | 47.14% |
| All Indica | 796 | 25.13% | 74.87% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 372 | 32.80% | 67.20% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216654911 | T->C | INTERGENIC | None |