Detailed information of SNP:
|
SNP ID:
sf0216655776(Gbrowse)
Chromosome: chr02 Position: 16655776 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 55.42% | 44.58% |
| All Indica | 791 | 83.82% | 16.18% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 370 | 78.65% | 21.35% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216655776 | C->T | INTERGENIC | None |