Detailed information of SNP:
|
SNP ID:
sf0216655956(Gbrowse)
Chromosome: chr02 Position: 16655956 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.31% | 44.69% |
| All Indica | 794 | 83.75% | 16.25% |
| All Japonica | 495 | 7.27% | 92.73% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 372 | 77.69% | 22.31% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 28.26% | 71.74% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216655956 | T->C | INTERGENIC | None |