Detailed information of SNP:
|
SNP ID:
sf0216656115(Gbrowse)
Chromosome: chr02 Position: 16656115 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.59% | 44.41% |
| All Indica | 792 | 83.96% | 16.04% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 371 | 78.17% | 21.83% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216656115 | T->C | INTERGENIC | None |