Detailed information of SNP:



SNP ID: sf0216656300(Gbrowse)

Chromosome: chr02

Position: 16656300
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 66.03% 33.97%
All Indica795 43.40% 56.60%
All Japonica496 96.77% 3.23%
Aus66 90.91% 9.09%
Indica I372 56.72% 43.28%
Indica II213 41.78% 58.22%
Indica Intermediate210 21.43% 78.57%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica93 87.10% 12.90%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216656300 C->T INTERGENIC None