Detailed information of SNP:
|
SNP ID:
sf0216656300(Gbrowse)
Chromosome: chr02 Position: 16656300 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 66.03% | 33.97% |
| All Indica | 795 | 43.40% | 56.60% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 372 | 56.72% | 43.28% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 210 | 21.43% | 78.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216656300 | C->T | INTERGENIC | None |