Detailed information of SNP:
|
SNP ID:
sf0216656957(Gbrowse)
Chromosome: chr02 Position: 16656957 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 54.33% | 45.67% |
| All Indica | 793 | 82.35% | 17.65% |
| All Japonica | 495 | 6.87% | 93.13% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 371 | 75.74% | 24.26% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216656957 | C->T | INTERGENIC | None |