Detailed information of SNP:
|
SNP ID:
sf0216658413(Gbrowse)
Chromosome: chr02 Position: 16658413 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 85.54% | 14.46% |
| All Indica | 799 | 79.35% | 20.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216658413 | T->C | LOC_Os02g28140(LOC_Os02g28140.1) | INTRON |