Detailed information of SNP:
|
SNP ID:
sf0216658956(Gbrowse)
Chromosome: chr02 Position: 16658956 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.14% | 32.86% |
| All Indica | 798 | 45.24% | 54.76% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 57.22% | 42.78% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216658956 | A->T | LOC_Os02g28140(LOC_Os02g28140.1) | Non-Synonymous SNP |