Detailed information of SNP:
|
SNP ID:
sf0216660211(Gbrowse)
Chromosome: chr02 Position: 16660211 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 78.93% | 21.07% |
| All Indica | 743 | 62.18% | 37.82% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 72.49% | 27.51% |
| Indica II | 197 | 60.41% | 39.59% |
| Indica Intermediate | 197 | 45.69% | 54.31% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216660211 | T->A | INTERGENIC | None |