Detailed information of SNP:
|
SNP ID:
sf0216660639(Gbrowse)
Chromosome: chr02 Position: 16660639 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 55.48% | 44.52% |
| All Indica | 788 | 83.76% | 16.24% |
| All Japonica | 490 | 6.94% | 93.06% |
| Aus | 63 | 73.02% | 26.98% |
| Indica I | 371 | 80.05% | 19.95% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 90 | 28.89% | 71.11% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216660639 | C->A | INTERGENIC | None |