Detailed information of SNP:
|
SNP ID:
sf0216667382(Gbrowse)
Chromosome: chr02 Position: 16667382 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 63.53% | 36.47% |
| All Indica | 789 | 92.40% | 7.60% |
| All Japonica | 495 | 13.33% | 86.67% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216667382 | A->G | INTERGENIC | None |