Detailed information of SNP:
|
SNP ID:
sf0216667600(Gbrowse)
Chromosome: chr02 Position: 16667600 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.43% | 35.57% |
| All Indica | 796 | 93.47% | 6.53% |
| All Japonica | 496 | 13.51% | 86.49% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216667600 | T->C | LOC_Os02g28160(LOC_Os02g28160.1) | Non-Synonymous SNP |