Detailed information of SNP:
|
SNP ID:
sf0216667784(Gbrowse)
Chromosome: chr02 Position: 16667784 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 64.07% | 35.93% |
| All Indica | 792 | 92.55% | 7.45% |
| All Japonica | 496 | 14.11% | 85.89% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 369 | 92.95% | 7.05% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216667784 | G->A | LOC_Os02g28160(LOC_Os02g28160.1) | INTRON |