Detailed information of SNP:
|
SNP ID:
sf0216667841(Gbrowse)
Chromosome: chr02 Position: 16667841 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 98.50% | 1.50% |
| All Indica | 786 | 98.35% | 1.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 369 | 97.83% | 2.17% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216667841 | C->T | LOC_Os02g28160(LOC_Os02g28160.1) | Non-Synonymous SNP |