Detailed information of SNP:
|
SNP ID:
sf0216668899(Gbrowse)
Chromosome: chr02 Position: 16668899 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.73% | 43.27% |
| All Indica | 799 | 29.29% | 70.71% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 36.00% | 64.00% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216668899 | T->C | INTERGENIC | None |