Detailed information of SNP:
|
SNP ID:
sf0216669687(Gbrowse)
Chromosome: chr02 Position: 16669687 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 75.34% | 24.66% |
| All Indica | 775 | 56.65% | 43.35% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 69.78% | 30.22% |
| Indica II | 209 | 47.37% | 52.63% |
| Indica Intermediate | 202 | 42.57% | 57.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216669687 | G->A | INTERGENIC | None |