Detailed information of SNP:
|
SNP ID:
sf0216672965(Gbrowse)
Chromosome: chr02 Position: 16672965 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.38% | 25.62% |
| All Indica | 797 | 73.27% | 26.73% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 373 | 64.34% | 35.66% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216672965 | A->C | LOC_Os02g28170(LOC_Os02g28170.1) | Non-Synonymous SNP |