Detailed information of SNP:
|
SNP ID:
sf0216673395(Gbrowse)
Chromosome: chr02 Position: 16673395 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 80.41% | 19.59% |
| All Indica | 791 | 74.08% | 25.92% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 370 | 65.14% | 34.86% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 208 | 75.48% | 24.52% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 67.03% | 32.97% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216673395 | C->T | LOC_Os02g28170(LOC_Os02g28170.1) | Non-Synonymous SNP |