Detailed information of SNP:
|
SNP ID:
sf0216673998(Gbrowse)
Chromosome: chr02 Position: 16673998 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.18% | 28.82% |
| All Indica | 799 | 49.94% | 50.06% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 62.13% | 37.87% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216673998 | C->T | LOC_Os02g28170(LOC_Os02g28170.1) | Non-Synonymous SNP |