Detailed information of SNP:
|
SNP ID:
sf0216674628(Gbrowse)
Chromosome: chr02 Position: 16674628 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 73.29% | 26.71% |
| All Indica | 797 | 71.64% | 28.36% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 374 | 62.57% | 37.43% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216674628 | A->G | LOC_Os02g28180(LOC_Os02g28180.1) | Non-Synonymous SNP |