Detailed information of SNP:
|
SNP ID:
sf0216675151(Gbrowse)
Chromosome: chr02 Position: 16675151 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.42% | 46.58% |
| All Indica | 799 | 77.60% | 22.40% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216675151 | T->C | LOC_Os02g28180(LOC_Os02g28180.1) | Synonymous |