Detailed information of SNP:
|
SNP ID:
sf0216679467(Gbrowse)
Chromosome: chr02 Position: 16679467 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.37% | 24.63% |
| All Indica | 797 | 72.40% | 27.60% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 64.17% | 35.83% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216679467 | C->T | INTERGENIC | None |