Detailed information of SNP:
|
SNP ID:
sf0216709039(Gbrowse)
Chromosome: chr02 Position: 16709039 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 88.04% | 11.96% |
| All Indica | 779 | 83.06% | 16.94% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 362 | 80.11% | 19.89% |
| Indica II | 207 | 77.78% | 22.22% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216709039 | C->T | LOC_Os02g28260(LOC_Os02g28260.1) | Non-Synonymous SNP |