Detailed information of SNP:
|
SNP ID:
sf0216709082(Gbrowse)
Chromosome: chr02 Position: 16709082 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 54.87% | 45.13% |
| All Indica | 746 | 37.53% | 62.47% |
| All Japonica | 493 | 86.82% | 13.18% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 348 | 40.23% | 59.77% |
| Indica II | 202 | 29.21% | 70.79% |
| Indica Intermediate | 196 | 41.33% | 58.67% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 91 | 45.05% | 54.95% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216709082 | T->C | LOC_Os02g28260(LOC_Os02g28260.1) | Non-Synonymous SNP |