Detailed information of SNP:
|
SNP ID:
sf0216710233(Gbrowse)
Chromosome: chr02 Position: 16710233 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 66.46% | 33.54% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 17.10% | 82.90% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216710233 | T->C | INTERGENIC | None |