Detailed information of SNP:
|
SNP ID:
sf0216710725(Gbrowse)
Chromosome: chr02 Position: 16710725 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1306 | 77.18% | 22.82% |
| All Indica | 740 | 64.46% | 35.54% |
| All Japonica | 454 | 96.26% | 3.74% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 340 | 74.71% | 25.29% |
| Indica II | 202 | 53.47% | 46.53% |
| Indica Intermediate | 198 | 58.08% | 41.92% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 60 | 80.00% | 20.00% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216710725 | C->T | INTERGENIC | None |