Detailed information of SNP:
|
SNP ID:
sf0216710840(Gbrowse)
Chromosome: chr02 Position: 16710840 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1318 | 64.49% | 35.51% |
| All Indica | 748 | 40.91% | 59.09% |
| All Japonica | 455 | 97.58% | 2.42% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 343 | 51.02% | 48.98% |
| Indica II | 206 | 39.81% | 60.19% |
| Indica Intermediate | 199 | 24.62% | 75.38% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 63 | 87.30% | 12.70% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216710840 | T->C | INTERGENIC | None |