Detailed information of SNP:
|
SNP ID:
sf0216715662(Gbrowse)
Chromosome: chr02 Position: 16715662 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.30% | 34.70% |
| All Indica | 798 | 92.98% | 7.02% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216715662 | C->T | LOC_Os02g28280(LOC_Os02g28280.1) | INTRON |