Detailed information of SNP:
|
SNP ID:
sf0216721716(Gbrowse)
Chromosome: chr02 Position: 16721716 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.92% | 28.08% |
| All Indica | 794 | 51.13% | 48.87% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 63.27% | 36.73% |
| Indica II | 212 | 46.23% | 53.77% |
| Indica Intermediate | 209 | 34.45% | 65.55% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216721716 | C->T | LOC_Os02g28300(LOC_Os02g28300.1) | Synonymous |