Detailed information of SNP:
|
SNP ID:
sf0216726495(Gbrowse)
Chromosome: chr02 Position: 16726495 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 69.08% | 30.92% |
| All Indica | 792 | 98.61% | 1.39% |
| All Japonica | 494 | 15.99% | 84.01% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216726495 | G->A | INTERGENIC | None |