Detailed information of SNP:
|
SNP ID:
sf0216726663(Gbrowse)
Chromosome: chr02 Position: 16726663 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 83.41% | 16.59% |
| All Indica | 768 | 77.34% | 22.66% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 64 | 46.88% | 53.12% |
| Indica I | 358 | 69.27% | 30.73% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 201 | 79.10% | 20.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216726663 | C->T | INTERGENIC | None |