Detailed information of SNP:
|
SNP ID:
sf0216731905(Gbrowse)
Chromosome: chr02 Position: 16731905 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 69.78% | 30.22% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 494 | 17.00% | 83.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 332 | 1.81% | 98.19% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216731905 | T->G | LOC_Os02g28320(LOC_Os02g28320.1) | Non-Synonymous SNP |