Detailed information of SNP:
|
SNP ID:
sf0216733176(Gbrowse)
Chromosome: chr02 Position: 16733176 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 57.44% | 42.56% |
| All Indica | 792 | 48.11% | 51.89% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 371 | 33.15% | 66.85% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 209 | 66.51% | 33.49% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216733176 | T->C | INTERGENIC | None |