Detailed information of SNP:
|
SNP ID:
sf0216735346(Gbrowse)
Chromosome: chr02 Position: 16735346 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 54.90% | 45.10% |
| All Indica | 799 | 28.29% | 71.71% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 36.27% | 63.73% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216735346 | G->A | LOC_Os02g28330(LOC_Os02g28330.1) | Non-Synonymous SNP |