Detailed information of SNP:
|
SNP ID:
sf0216737151(Gbrowse)
Chromosome: chr02 Position: 16737151 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 82.82% | 17.18% |
| All Indica | 764 | 82.20% | 17.80% |
| All Japonica | 493 | 86.82% | 13.18% |
| Aus | 64 | 64.06% | 35.94% |
| Indica I | 354 | 75.99% | 24.01% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 200 | 83.00% | 17.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 90 | 40.00% | 60.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216737151 | G->A | LOC_Os02g28330(LOC_Os02g28330.1) | Synonymous |