Detailed information of SNP:
|
SNP ID:
sf0216737977(Gbrowse)
Chromosome: chr02 Position: 16737977 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 67.23% | 32.77% |
| All Indica | 796 | 95.23% | 4.77% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216737977 | C->A | LOC_Os02g28330(LOC_Os02g28330.1) | Non-Synonymous SNP |