Detailed information of SNP:
|
SNP ID:
sf0216738634(Gbrowse)
Chromosome: chr02 Position: 16738634 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 65.91% | 34.09% |
| All Indica | 795 | 96.86% | 3.14% |
| All Japonica | 496 | 14.92% | 85.08% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216738634 | C->T | LOC_Os02g28330(LOC_Os02g28330.1) | Non-Synonymous SNP |