Detailed information of SNP:



SNP ID: sf0216746869(Gbrowse)

Chromosome: chr02

Position: 16746869
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 71.09% 28.91%
All Indica798 49.62% 50.38%
All Japonica497 99.40% 0.60%
Aus67 100.00% 0.00%
Indica I374 62.57% 37.43%
Indica II213 45.07% 54.93%
Indica Intermediate211 31.28% 68.72%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216746869 G->A INTERGENIC None