Detailed information of SNP:
|
SNP ID:
sf0216748229(Gbrowse)
Chromosome: chr02 Position: 16748229 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 59.92% | 40.08% |
| All Indica | 794 | 52.27% | 47.73% |
| All Japonica | 496 | 83.67% | 16.33% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 38.34% | 61.66% |
| Indica II | 210 | 59.52% | 40.48% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216748229 | T->C | INTERGENIC | None |