Detailed information of SNP:
|
SNP ID:
sf0216749862(Gbrowse)
Chromosome: chr02 Position: 16749862 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.75% | 36.25% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216749862 | G->A | INTERGENIC | None |