Detailed information of SNP:
|
SNP ID:
sf0216750186(Gbrowse)
Chromosome: chr02 Position: 16750186 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 76.15% | 23.85% |
| All Indica | 796 | 73.99% | 26.01% |
| All Japonica | 496 | 83.87% | 16.13% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 373 | 65.42% | 34.58% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216750186 | T->C | INTERGENIC | None |