Detailed information of SNP:
|
SNP ID:
sf0216750515(Gbrowse)
Chromosome: chr02 Position: 16750515 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 63.87% | 36.13% |
| All Indica | 754 | 91.51% | 8.49% |
| All Japonica | 496 | 16.33% | 83.67% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 353 | 91.50% | 8.50% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 195 | 95.38% | 4.62% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216750515 | C->T | INTERGENIC | None |