Detailed information of SNP:



SNP ID: sf0216750537(Gbrowse)

Chromosome: chr02

Position: 16750537
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1385 61.66% 38.34%
All Indica766 39.30% 60.70%
All Japonica497 97.59% 2.41%
Aus67 58.21% 41.79%
Indica I359 49.03% 50.97%
Indica II209 25.36% 74.64%
Indica Intermediate198 36.36% 63.64%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 14.29% 85.71%
Intermediate41 65.85% 34.15%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216750537 C->T INTERGENIC None