Detailed information of SNP:
|
SNP ID:
sf0216750537(Gbrowse)
Chromosome: chr02 Position: 16750537 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 61.66% | 38.34% |
| All Indica | 766 | 39.30% | 60.70% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 359 | 49.03% | 50.97% |
| Indica II | 209 | 25.36% | 74.64% |
| Indica Intermediate | 198 | 36.36% | 63.64% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216750537 | C->T | INTERGENIC | None |