Detailed information of SNP:
|
SNP ID:
sf0216750630(Gbrowse)
Chromosome: chr02 Position: 16750630 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 65.06% | 34.94% |
| All Indica | 792 | 92.05% | 7.95% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 92.47% | 7.53% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216750630 | A->G | INTERGENIC | None |