Detailed information of SNP:



SNP ID: sf0216751833(Gbrowse)

Chromosome: chr02

Position: 16751833
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1314 53.12% 46.88%
All Indica701 75.46% 24.54%
All Japonica497 14.49% 85.51%
Aus63 92.06% 7.94%
Indica I319 66.77% 33.23%
Indica II199 83.42% 16.58%
Indica Intermediate183 81.97% 18.03%
Temperate Japonica335 1.79% 98.21%
Tropical Japonica94 60.64% 39.36%
Japonica Intermediate68 13.24% 86.76%
Group VI/Aromatic14 92.86% 7.14%
Intermediate39 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216751833 G->A LOC_Os02g28350(LOC_Os02g28350.1) Non-Synonymous SNP