Detailed information of SNP:
SNP ID:
sf0216751833(Gbrowse)
Chromosome: chr02 Position: 16751833 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1314 | 53.12% | 46.88% |
All Indica | 701 | 75.46% | 24.54% |
All Japonica | 497 | 14.49% | 85.51% |
Aus | 63 | 92.06% | 7.94% |
Indica I | 319 | 66.77% | 33.23% |
Indica II | 199 | 83.42% | 16.58% |
Indica Intermediate | 183 | 81.97% | 18.03% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 94 | 60.64% | 39.36% |
Japonica Intermediate | 68 | 13.24% | 86.76% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0216751833 | G->A | LOC_Os02g28350(LOC_Os02g28350.1) | Non-Synonymous SNP |